Gene
Taestivum Traes 2DS E2C86DD0E
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DS_E2C86DD0E Traes_2DS_E2C86DD0E |
ta_iwgsc_2ds_v1_5325950 | 6098 | 12073 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DS_E2C86DD0E.1 Traes_2DS_E2C86DD0E.1 PAC:31772882 |
High | No | 2033 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -34.343 AMFE: -0.683 GC content %: 50.320 | |
| Taestivum_Traes_2DS_E2C86DD0E.2 Traes_2DS_E2C86DD0E.2 PAC:31772881 |
High | No | 1446 | Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -28.423 AMFE: -0.616 GC content %: 46.127 | |
| Taestivum_Traes_2DS_E2C86DD0E.3 Traes_2DS_E2C86DD0E.3 PAC:31772883 |
High | No | 1594 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -25.038 AMFE: -0.629 GC content %: 39.837 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
