Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_2DS_E5A8637CA Traes_2DS_E5A8637CA |
ta_iwgsc_2ds_v1_5388260 | 2 | 957 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_2DS_E5A8637CA.1 Traes_2DS_E5A8637CA.1 PAC:31788536 |
High | No | 411 | Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -32.311 AMFE: -0.553 GC content %: 58.394 | |
Taestivum_Traes_2DS_E5A8637CA.2 Traes_2DS_E5A8637CA.2 PAC:31788537 |
Low | Yes | 550 | Get ORF Coding potential... Type: noncoding Potential: -0.601 Folding energies... MFEI: -33.073 AMFE: -0.638 GC content %: 51.818 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_2DS_E5A8637CA.2 | Rfam | 11.0 | MIR1122 | 3.3e-6 |