Gene

Taestivum Traes 2DS E8E0111B0

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_2DS_E8E0111B0
Traes_2DS_E8E0111B0
ta_iwgsc_2ds_v1_5290358 168 575 Phytozome v2.2 Triticum_aestivum
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_2DS_E8E0111B0.1
Traes_2DS_E8E0111B0.1
PAC:31990029
High No 408
Coding potential...
Type: noncoding Potential: -0.764
Folding energies...
MFEI: -44.191 AMFE: -0.683
GC content
%: 64.706


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Traes_2DS_E8E0111B0.png