Gene
Taestivum Traes 3AL 0797E71CE
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AL_0797E71CE Traes_3AL_0797E71CE |
ta_iwgsc_3al_v1_4423720 | 1 | 3961 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AL_0797E71CE.1 Traes_3AL_0797E71CE.1 PAC:31814550 |
Low | No | 994 | Get ORF Coding potential... Type: noncoding Potential: -0.037 Folding energies... MFEI: -28.531 AMFE: -0.661 GC content %: 43.159 | |
| Taestivum_Traes_3AL_0797E71CE.2 Traes_3AL_0797E71CE.2 PAC:31814551 |
High | No | 1577 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -23.247 AMFE: -0.629 GC content %: 36.969 | |
| Taestivum_Traes_3AL_0797E71CE.3 Traes_3AL_0797E71CE.3 PAC:31814554 |
Low | No | 1326 | Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -27.210 AMFE: -0.655 GC content %: 41.554 | |
| Taestivum_Traes_3AL_0797E71CE.4 Traes_3AL_0797E71CE.4 PAC:31814553 |
Low | No | 1310 | Get ORF Coding potential... Type: noncoding Potential: -0.102 Folding energies... MFEI: -27.397 AMFE: -0.665 GC content %: 41.221 | |
| Taestivum_Traes_3AL_0797E71CE.5 Traes_3AL_0797E71CE.5 PAC:31814552 |
Low | No | 2741 | Get ORF Coding potential... Type: noncoding Potential: -0.204 Folding energies... MFEI: -25.779 AMFE: -0.665 GC content %: 38.781 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
