GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_0E8B9B505 Traes_3AL_0E8B9B505	ta_iwgsc_3al_v1_4403035	1801	2398	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_0E8B9B505.1 Traes_3AL_0E8B9B505.1 PAC:31923281	Low	No	598		Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -28.127 AMFE: -0.640 GC content %: 43.980
Taestivum_Traes_3AL_0E8B9B505.2 Traes_3AL_0E8B9B505.2 PAC:31923282	Low	No	312		Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -28.878 AMFE: -0.581 GC content %: 49.679

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).