GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_279A6BF8F Traes_3AL_279A6BF8F	ta_iwgsc_3al_v1_4448301	1	1807	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_279A6BF8F.1 Traes_3AL_279A6BF8F.1 PAC:31853488	Low	No	891		Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -25.309 AMFE: -0.575 GC content %: 43.996
Taestivum_Traes_3AL_279A6BF8F.2 Traes_3AL_279A6BF8F.2 PAC:31853490	Low	No	1642		Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -24.300 AMFE: -0.605 GC content %: 40.134
Taestivum_Traes_3AL_279A6BF8F.3 Traes_3AL_279A6BF8F.3 PAC:31853489	Low	No	1621		Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -24.331 AMFE: -0.606 GC content %: 40.160
Taestivum_Traes_3AL_279A6BF8F.4 Traes_3AL_279A6BF8F.4 PAC:31853491	Low	No	1807		Get ORF Coding potential... Type: noncoding Potential: -0.073 Folding energies... MFEI: -24.128 AMFE: -0.612 GC content %: 39.458

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).