GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_2FBCC6D4C Traes_3AL_2FBCC6D4C	ta_iwgsc_3al_v1_4452410	1105	3245	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_2FBCC6D4C.1 Traes_3AL_2FBCC6D4C.1 PAC:31941816	High	No	539		Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -23.692 AMFE: -0.568 GC content %: 41.744
Taestivum_Traes_3AL_2FBCC6D4C.2 Traes_3AL_2FBCC6D4C.2 PAC:31941818	High	No	490		Get ORF Coding potential... Type: noncoding Potential: -0.462 Folding energies... MFEI: -23.020 AMFE: -0.545 GC content %: 42.245
Taestivum_Traes_3AL_2FBCC6D4C.3 Traes_3AL_2FBCC6D4C.3 PAC:31941817	High	No	544		Get ORF Coding potential... Type: noncoding Potential: -0.445 Folding energies... MFEI: -23.438 AMFE: -0.564 GC content %: 41.544

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).