GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_354C6CBC6 Traes_3AL_354C6CBC6	ta_iwgsc_3al_v1_3787825	4	906	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_354C6CBC6.1 Traes_3AL_354C6CBC6.1 PAC:31844989	Low	No	752		Get ORF Coding potential... Type: noncoding Potential: -0.589 Folding energies... MFEI: -36.197 AMFE: -0.642 GC content %: 56.383
Taestivum_Traes_3AL_354C6CBC6.2 Traes_3AL_354C6CBC6.2 PAC:31844990	Low	No	780		Get ORF Coding potential... Type: noncoding Potential: -0.668 Folding energies... MFEI: -36.231 AMFE: -0.645 GC content %: 56.154

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).