GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_3D19027C2 Traes_3AL_3D19027C2	ta_iwgsc_3al_v1_4254976	117	648	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_3D19027C2.1 Traes_3AL_3D19027C2.1 PAC:31935577	High	No	259		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -28.224 AMFE: -0.703 GC content %: 40.154
Taestivum_Traes_3AL_3D19027C2.2 Traes_3AL_3D19027C2.2 PAC:31935576	High	No	267		Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -24.644 AMFE: -0.685 GC content %: 35.955

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).