GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_40CDC754A Traes_3AL_40CDC754A	ta_iwgsc_3al_v1_4246756	1	1598	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_40CDC754A.2 Traes_3AL_40CDC754A.2 PAC:31812591	High	No	1099		Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -27.789 AMFE: -0.606 GC content %: 45.860
Taestivum_Traes_3AL_40CDC754A.4 Traes_3AL_40CDC754A.4 PAC:31812590	High	No	1598		Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -27.603 AMFE: -0.617 GC content %: 44.743

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).