GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_4E9A8CCC7 Traes_3AL_4E9A8CCC7	ta_iwgsc_3al_v1_558535	1	414	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_4E9A8CCC7.1 Traes_3AL_4E9A8CCC7.1 PAC:31835551	High	No	390		Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -31.538 AMFE: -0.606 GC content %: 52.051
Taestivum_Traes_3AL_4E9A8CCC7.2 Traes_3AL_4E9A8CCC7.2 PAC:31835552	High	No	304		Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -29.901 AMFE: -0.548 GC content %: 54.605
Taestivum_Traes_3AL_4E9A8CCC7.3 Traes_3AL_4E9A8CCC7.3 PAC:31835553	High	No	210		Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -26.667 AMFE: -0.479 GC content %: 55.714

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).