GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_4EF33A2B8 Traes_3AL_4EF33A2B8	ta_iwgsc_3al_v1_4450429	2521	3765	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_4EF33A2B8.1 Traes_3AL_4EF33A2B8.1 PAC:31839800	High	No	720		Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -23.472 AMFE: -0.549 GC content %: 42.778
Taestivum_Traes_3AL_4EF33A2B8.2 Traes_3AL_4EF33A2B8.2 PAC:31839801	High	No	304		Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -20.164 AMFE: -0.403 GC content %: 50.000
Taestivum_Traes_3AL_4EF33A2B8.3 Traes_3AL_4EF33A2B8.3 PAC:31839802	High	No	228		Get ORF Coding potential... Type: noncoding Potential: -0.533 Folding energies... MFEI: -20.482 AMFE: -0.441 GC content %: 46.491

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).