Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_3AL_68AB99058 Traes_3AL_68AB99058 |
ta_iwgsc_3al_v1_1817927 | 335 | 1450 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_3AL_68AB99058.1 Traes_3AL_68AB99058.1 PAC:31754163 |
High | No | 355 | Get ORF Coding potential... Type: noncoding Potential: -0.422 Folding energies... MFEI: -21.070 AMFE: -0.542 GC content %: 38.873 | |
Taestivum_Traes_3AL_68AB99058.2 Traes_3AL_68AB99058.2 PAC:31754164 |
Low | No | 345 | Get ORF Coding potential... Type: noncoding Potential: -0.427 Folding energies... MFEI: -22.493 AMFE: -0.528 GC content %: 42.609 | |
Taestivum_Traes_3AL_68AB99058.3 Traes_3AL_68AB99058.3 PAC:31754165 |
Low | No | 276 | Get ORF Coding potential... Type: noncoding Potential: -0.337 Folding energies... MFEI: -19.058 AMFE: -0.470 GC content %: 40.580 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_3AL_68AB99058.3 | RepBase (RepeatMasker) | 2014-01-31 | RTE-1_TD | |
Taestivum_Traes_3AL_68AB99058.2 | RepBase (RepeatMasker) | 2014-01-31 | RTE-1_TD |