GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_6C1572EFB Traes_3AL_6C1572EFB	ta_iwgsc_3al_v1_3773819	4	1052	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_6C1572EFB.1 Traes_3AL_6C1572EFB.1 PAC:31870171	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -1.367 Folding energies... MFEI: -29.177 AMFE: -0.589 GC content %: 49.504
Taestivum_Traes_3AL_6C1572EFB.2 Traes_3AL_6C1572EFB.2 PAC:31870170	High	No	953		Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -27.545 AMFE: -0.594 GC content %: 46.380

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).