GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_8356CCEDE Traes_3AL_8356CCEDE	ta_iwgsc_3al_v1_4317600	979	3389	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_8356CCEDE.1 Traes_3AL_8356CCEDE.1 PAC:31899607	High	No	321		Get ORF Coding potential... Type: noncoding Potential: -1.447 Folding energies... MFEI: -25.234 AMFE: -0.596 GC content %: 42.368
Taestivum_Traes_3AL_8356CCEDE.2 Traes_3AL_8356CCEDE.2 PAC:31899606	High	No	346		Get ORF Coding potential... Type: noncoding Potential: -1.450 Folding energies... MFEI: -26.012 AMFE: -0.608 GC content %: 42.775
Taestivum_Traes_3AL_8356CCEDE.3 Traes_3AL_8356CCEDE.3 PAC:31899608	High	No	286		Get ORF Coding potential... Type: noncoding Potential: -1.441 Folding energies... MFEI: -23.112 AMFE: -0.542 GC content %: 42.657

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).