GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_83B2351EA Traes_3AL_83B2351EA	ta_iwgsc_3al_v1_4452078	1	673	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_83B2351EA.1 Traes_3AL_83B2351EA.1 PAC:31869558	Low	No	572		Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -23.794 AMFE: -0.610 GC content %: 38.986
Taestivum_Traes_3AL_83B2351EA.2 Traes_3AL_83B2351EA.2 PAC:31869559	Low	No	406		Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -25.665 AMFE: -0.620 GC content %: 41.379

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).