GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_920EE2E2F Traes_3AL_920EE2E2F	ta_iwgsc_3al_v1_4447440	1	3361	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_920EE2E2F.2 Traes_3AL_920EE2E2F.2 PAC:31946575	Low	No	339		Get ORF Coding potential... Type: noncoding Potential: -0.642 Folding energies... MFEI: -39.558 AMFE: -0.670 GC content %: 58.997
Taestivum_Traes_3AL_920EE2E2F.3 Traes_3AL_920EE2E2F.3 PAC:31946577	Low	No	365		Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -36.959 AMFE: -0.661 GC content %: 55.890
Taestivum_Traes_3AL_920EE2E2F.4 Traes_3AL_920EE2E2F.4 PAC:31946578	High	No	1174		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -27.249 AMFE: -0.650 GC content %: 41.908

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).