GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_92DE35ABF Traes_3AL_92DE35ABF	ta_iwgsc_3al_v1_4232921	382	937	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_92DE35ABF.1 Traes_3AL_92DE35ABF.1 PAC:32008796	Low	No	556		Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -24.946 AMFE: -0.595 GC content %: 41.906
Taestivum_Traes_3AL_92DE35ABF.2 Traes_3AL_92DE35ABF.2 PAC:32008795	Low	No	220		Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -23.955 AMFE: -0.471 GC content %: 50.909

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).