GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AL_9DACA30DF Traes_3AL_9DACA30DF	ta_iwgsc_3al_v1_4450266	17	3512	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AL_9DACA30DF.11 Traes_3AL_9DACA30DF.11 PAC:31993043	Low	No	807		Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -27.485 AMFE: -0.573 GC content %: 47.955
Taestivum_Traes_3AL_9DACA30DF.8 Traes_3AL_9DACA30DF.8 PAC:31993038	Low	No	1578		Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -27.060 AMFE: -0.569 GC content %: 47.592

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).