Gene
Taestivum Traes 3AL A5EE04388
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AL_A5EE04388 Traes_3AL_A5EE04388 |
ta_iwgsc_3al_v1_4300692 | 1 | 2266 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AL_A5EE04388.1 Traes_3AL_A5EE04388.1 PAC:32022324 |
High | No | 377 | Get ORF Coding potential... Type: noncoding Potential: -0.658 Folding energies... MFEI: -29.576 AMFE: -0.566 GC content %: 52.255 | |
| Taestivum_Traes_3AL_A5EE04388.2 Traes_3AL_A5EE04388.2 PAC:32022323 |
High | No | 303 | Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -26.535 AMFE: -0.525 GC content %: 50.495 | |
| Taestivum_Traes_3AL_A5EE04388.3 Traes_3AL_A5EE04388.3 PAC:32022326 |
High | No | 556 | Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -27.230 AMFE: -0.576 GC content %: 47.302 | |
| Taestivum_Traes_3AL_A5EE04388.4 Traes_3AL_A5EE04388.4 PAC:32022325 |
High | No | 377 | Get ORF Coding potential... Type: noncoding Potential: -0.658 Folding energies... MFEI: -29.973 AMFE: -0.571 GC content %: 52.520 | |
| Taestivum_Traes_3AL_A5EE04388.5 Traes_3AL_A5EE04388.5 PAC:32022327 |
High | No | 259 | Get ORF Coding potential... Type: noncoding Potential: -1.509 Folding energies... MFEI: -21.544 AMFE: -0.401 GC content %: 53.668 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
