Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_3AL_B6FCF9A2D Traes_3AL_B6FCF9A2D |
ta_iwgsc_3al_v1_4437712 | 3 | 1339 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_3AL_B6FCF9A2D.1 Traes_3AL_B6FCF9A2D.1 PAC:31931955 |
Low | Yes | 711 | Get ORF Coding potential... Type: noncoding Potential: -0.542 Folding energies... MFEI: -41.153 AMFE: -0.719 GC content %: 57.243 | |
Taestivum_Traes_3AL_B6FCF9A2D.2 Traes_3AL_B6FCF9A2D.2 PAC:31931956 |
Low | No | 840 | Get ORF Coding potential... Type: noncoding Potential: -0.542 Folding energies... MFEI: -40.440 AMFE: -0.709 GC content %: 57.024 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_3AL_B6FCF9A2D.1 | Rfam | 11.0 | MIR1122 | 4.0e-4 |
Taestivum_Traes_3AL_B6FCF9A2D.1 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM | |
Taestivum_Traes_3AL_B6FCF9A2D.2 | RepBase (RepeatMasker) | 2014-01-31 | VEJU1_TM-LTR |