Gene
Taestivum Traes 3AL BD0D7C1BE
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AL_BD0D7C1BE Traes_3AL_BD0D7C1BE |
ta_iwgsc_3al_v1_4449847 | 5129 | 9110 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AL_BD0D7C1BE.1 Traes_3AL_BD0D7C1BE.1 PAC:31831636 |
Low | No | 2207 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -24.341 AMFE: -0.689 GC content %: 35.342 | |
| Taestivum_Traes_3AL_BD0D7C1BE.2 Traes_3AL_BD0D7C1BE.2 PAC:31831638 |
Low | No | 3084 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -25.084 AMFE: -0.681 GC content %: 36.835 | |
| Taestivum_Traes_3AL_BD0D7C1BE.3 Traes_3AL_BD0D7C1BE.3 PAC:31831635 |
Low | No | 2794 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -25.157 AMFE: -0.677 GC content %: 37.151 | |
| Taestivum_Traes_3AL_BD0D7C1BE.4 Traes_3AL_BD0D7C1BE.4 PAC:31831637 |
Low | No | 3582 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -24.810 AMFE: -0.686 GC content %: 36.181 | |
| Taestivum_Traes_3AL_BD0D7C1BE.5 Traes_3AL_BD0D7C1BE.5 PAC:31831642 |
Low | No | 2609 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -24.810 AMFE: -0.671 GC content %: 36.949 | |
| Taestivum_Traes_3AL_BD0D7C1BE.6 Traes_3AL_BD0D7C1BE.6 PAC:31831640 |
Low | No | 1515 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -24.865 AMFE: -0.633 GC content %: 39.274 | |
| Taestivum_Traes_3AL_BD0D7C1BE.7 Traes_3AL_BD0D7C1BE.7 PAC:31831639 |
Low | No | 1459 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -24.716 AMFE: -0.634 GC content %: 38.999 | |
| Taestivum_Traes_3AL_BD0D7C1BE.8 Traes_3AL_BD0D7C1BE.8 PAC:31831641 |
Low | No | 2033 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -24.737 AMFE: -0.660 GC content %: 37.482 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_3AL_BD0D7C1BE.2 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
| Taestivum_Traes_3AL_BD0D7C1BE.3 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
| Taestivum_Traes_3AL_BD0D7C1BE.4 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
| Taestivum_Traes_3AL_BD0D7C1BE.1 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
