Gene
Taestivum Traes 3AL CE8F085CB
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AL_CE8F085CB Traes_3AL_CE8F085CB |
ta_iwgsc_3al_v1_4423683 | 585 | 2923 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AL_CE8F085CB.1 Traes_3AL_CE8F085CB.1 PAC:32016623 |
High | No | 710 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -31.761 AMFE: -0.632 GC content %: 50.282 | |
| Taestivum_Traes_3AL_CE8F085CB.2 Traes_3AL_CE8F085CB.2 PAC:32016621 |
High | No | 856 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -31.460 AMFE: -0.638 GC content %: 49.299 | |
| Taestivum_Traes_3AL_CE8F085CB.3 Traes_3AL_CE8F085CB.3 PAC:32016622 |
High | No | 1031 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -30.436 AMFE: -0.644 GC content %: 47.236 | |
| Taestivum_Traes_3AL_CE8F085CB.4 Traes_3AL_CE8F085CB.4 PAC:32016624 |
High | No | 765 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -31.804 AMFE: -0.634 GC content %: 50.196 | |
| Taestivum_Traes_3AL_CE8F085CB.5 Traes_3AL_CE8F085CB.5 PAC:32016625 |
High | No | 1071 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -30.784 AMFE: -0.654 GC content %: 47.059 | |
| Taestivum_Traes_3AL_CE8F085CB.6 Traes_3AL_CE8F085CB.6 PAC:32016629 |
High | No | 658 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -31.292 AMFE: -0.635 GC content %: 49.240 | |
| Taestivum_Traes_3AL_CE8F085CB.7 Traes_3AL_CE8F085CB.7 PAC:32016627 |
High | No | 1113 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -30.530 AMFE: -0.655 GC content %: 46.631 | |
| Taestivum_Traes_3AL_CE8F085CB.8 Traes_3AL_CE8F085CB.8 PAC:32016626 |
High | No | 1012 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -30.879 AMFE: -0.651 GC content %: 47.431 | |
| Taestivum_Traes_3AL_CE8F085CB.9 Traes_3AL_CE8F085CB.9 PAC:32016628 |
High | No | 1038 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -30.549 AMFE: -0.647 GC content %: 47.206 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
