Gene
Taestivum Traes 3AL E5627885F
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AL_E5627885F Traes_3AL_E5627885F |
ta_iwgsc_3al_v1_4250688 | 3422 | 6442 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AL_E5627885F.1 Traes_3AL_E5627885F.1 PAC:32027416 |
Low | No | 1548 | Get ORF Coding potential... Type: coding Potential: 0.875 Folding energies... MFEI: -25.556 AMFE: -0.544 GC content %: 46.964 | |
| Taestivum_Traes_3AL_E5627885F.2 Traes_3AL_E5627885F.2 PAC:32027413 |
Low | No | 1735 | Get ORF Coding potential... Type: coding Potential: 0.928 Folding energies... MFEI: -26.000 AMFE: -0.553 GC content %: 47.032 | |
| Taestivum_Traes_3AL_E5627885F.3 Traes_3AL_E5627885F.3 PAC:32027414 |
Low | No | 1812 | Get ORF Coding potential... Type: coding Potential: 1.034 Folding energies... MFEI: -25.789 AMFE: -0.560 GC content %: 46.026 | |
| Taestivum_Traes_3AL_E5627885F.4 Traes_3AL_E5627885F.4 PAC:32027415 |
Low | No | 1670 | Get ORF Coding potential... Type: coding Potential: 0.895 Folding energies... MFEI: -26.311 AMFE: -0.558 GC content %: 47.186 | |
| Taestivum_Traes_3AL_E5627885F.5 Traes_3AL_E5627885F.5 PAC:32027417 |
Low | No | 1781 | Get ORF Coding potential... Type: coding Potential: 0.423 Folding energies... MFEI: -27.052 AMFE: -0.576 GC content %: 46.996 | |
| Taestivum_Traes_3AL_E5627885F.6 Traes_3AL_E5627885F.6 PAC:32027418 |
Low | No | 1779 | Get ORF Coding potential... Type: coding Potential: 0.513 Folding energies... MFEI: -26.993 AMFE: -0.575 GC content %: 46.936 | |
| Taestivum_Traes_3AL_E5627885F.7 Traes_3AL_E5627885F.7 PAC:32027419 |
Low | No | 1732 | Get ORF Coding potential... Type: coding Potential: 0.392 Folding energies... MFEI: -26.403 AMFE: -0.564 GC content %: 46.824 | |
| Taestivum_Traes_3AL_E5627885F.8 Traes_3AL_E5627885F.8 PAC:32027420 |
Low | No | 1584 | Get ORF Coding potential... Type: coding Potential: 0.350 Folding energies... MFEI: -26.042 AMFE: -0.560 GC content %: 46.465 | |
| Taestivum_Traes_3AL_E5627885F.9 Traes_3AL_E5627885F.9 PAC:32027421 |
Low | No | 1534 | Get ORF Coding potential... Type: coding Potential: 0.012 Folding energies... MFEI: -25.756 AMFE: -0.538 GC content %: 47.914 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
