GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_049BB6BAB Traes_3AS_049BB6BAB	ta_iwgsc_3as_v1_3418514	886	5031	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_049BB6BAB.2 Traes_3AS_049BB6BAB.2 PAC:31834497	High	No	877		Get ORF Coding potential... Type: noncoding Potential: -0.385 Folding energies... MFEI: -27.206 AMFE: -0.586 GC content %: 46.408
Taestivum_Traes_3AS_049BB6BAB.3 Traes_3AS_049BB6BAB.3 PAC:31834495	High	No	1552		Get ORF Coding potential... Type: noncoding Potential: -0.374 Folding energies... MFEI: -29.659 AMFE: -0.657 GC content %: 45.168
Taestivum_Traes_3AS_049BB6BAB.4 Traes_3AS_049BB6BAB.4 PAC:31834496	High	No	1293		Get ORF Coding potential... Type: noncoding Potential: -0.540 Folding energies... MFEI: -28.445 AMFE: -0.633 GC content %: 44.934

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).