Gene
Taestivum Traes 3AS 06855B9B5
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AS_06855B9B5 Traes_3AS_06855B9B5 |
ta_iwgsc_3as_v1_1467448 | 2950 | 5235 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AS_06855B9B5.2 Traes_3AS_06855B9B5.2 PAC:31742880 |
High | No | 472 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -28.856 AMFE: -0.570 GC content %: 50.636 | |
| Taestivum_Traes_3AS_06855B9B5.3 Traes_3AS_06855B9B5.3 PAC:31742881 |
High | No | 377 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -30.928 AMFE: -0.563 GC content %: 54.907 | |
| Taestivum_Traes_3AS_06855B9B5.4 Traes_3AS_06855B9B5.4 PAC:31742883 |
High | No | 460 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -26.674 AMFE: -0.529 GC content %: 50.435 | |
| Taestivum_Traes_3AS_06855B9B5.5 Traes_3AS_06855B9B5.5 PAC:31742884 |
High | No | 457 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -25.864 AMFE: -0.518 GC content %: 49.891 | |
| Taestivum_Traes_3AS_06855B9B5.6 Traes_3AS_06855B9B5.6 PAC:31742882 |
High | No | 383 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -30.836 AMFE: -0.568 GC content %: 54.308 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
