GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_1669C55DA Traes_3AS_1669C55DA	ta_iwgsc_3as_v1_225778	1	467	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_1669C55DA.1 Traes_3AS_1669C55DA.1 PAC:31783765	High	No	374		Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -35.615 AMFE: -0.564 GC content %: 63.102
Taestivum_Traes_3AS_1669C55DA.2 Traes_3AS_1669C55DA.2 PAC:31783764	High	No	288		Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -35.660 AMFE: -0.538 GC content %: 66.319

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).