GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_2651A9917 Traes_3AS_2651A9917	ta_iwgsc_3as_v1_3388986	1	318	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_2651A9917.1 Traes_3AS_2651A9917.1 PAC:31868878	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -17.642 AMFE: -0.425 GC content %: 41.509
Taestivum_Traes_3AS_2651A9917.2 Traes_3AS_2651A9917.2 PAC:31868877	High	No	245		Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -18.041 AMFE: -0.388 GC content %: 46.531

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).