Gene
Taestivum Traes 3AS 351FF9F61
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AS_351FF9F61 Traes_3AS_351FF9F61 |
ta_iwgsc_3as_v1_3444274 | 1302 | 3040 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AS_351FF9F61.1 Traes_3AS_351FF9F61.1 PAC:31968458 |
High | No | 1547 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.824 AMFE: -0.736 GC content %: 39.173 | |
| Taestivum_Traes_3AS_351FF9F61.2 Traes_3AS_351FF9F61.2 PAC:31968457 |
High | No | 1337 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -28.556 AMFE: -0.714 GC content %: 40.015 | |
| Taestivum_Traes_3AS_351FF9F61.3 Traes_3AS_351FF9F61.3 PAC:31968459 |
High | No | 1167 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -28.115 AMFE: -0.700 GC content %: 40.189 | |
| Taestivum_Traes_3AS_351FF9F61.4 Traes_3AS_351FF9F61.4 PAC:31968460 |
High | No | 1174 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -27.981 AMFE: -0.720 GC content %: 38.842 | |
| Taestivum_Traes_3AS_351FF9F61.5 Traes_3AS_351FF9F61.5 PAC:31968462 |
High | No | 1517 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -28.780 AMFE: -0.741 GC content %: 38.827 | |
| Taestivum_Traes_3AS_351FF9F61.6 Traes_3AS_351FF9F61.6 PAC:31968461 |
High | No | 1275 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -28.878 AMFE: -0.723 GC content %: 39.922 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
