GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_377271D65 Traes_3AS_377271D65	ta_iwgsc_3as_v1_3440425	279	8646	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_377271D65.12 Traes_3AS_377271D65.12 PAC:31794859	High	No	696		Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -29.023 AMFE: -0.536 GC content %: 54.167
Taestivum_Traes_3AS_377271D65.13 Traes_3AS_377271D65.13 PAC:31794861	High	No	1825		Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -29.315 AMFE: -0.624 GC content %: 46.959
Taestivum_Traes_3AS_377271D65.14 Traes_3AS_377271D65.14 PAC:31794862	High	No	1064		Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -24.586 AMFE: -0.630 GC content %: 39.004
Taestivum_Traes_3AS_377271D65.15 Traes_3AS_377271D65.15 PAC:31794860	High	No	613		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -23.507 AMFE: -0.643 GC content %: 36.542

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).