Gene
Taestivum Traes 3AS 3B7CA9749
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AS_3B7CA9749 Traes_3AS_3B7CA9749 |
ta_iwgsc_3as_v1_3276976 | 198 | 2515 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AS_3B7CA9749.10 Traes_3AS_3B7CA9749.10 PAC:31941363 |
High | No | 1050 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -30.305 AMFE: -0.610 GC content %: 49.714 | |
| Taestivum_Traes_3AS_3B7CA9749.11 Traes_3AS_3B7CA9749.11 PAC:31941364 |
High | No | 1099 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -30.091 AMFE: -0.605 GC content %: 49.773 | |
| Taestivum_Traes_3AS_3B7CA9749.2 Traes_3AS_3B7CA9749.2 PAC:31941356 |
High | No | 1108 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -30.181 AMFE: -0.616 GC content %: 49.007 | |
| Taestivum_Traes_3AS_3B7CA9749.4 Traes_3AS_3B7CA9749.4 PAC:31941358 |
High | No | 1103 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -30.308 AMFE: -0.612 GC content %: 49.501 | |
| Taestivum_Traes_3AS_3B7CA9749.6 Traes_3AS_3B7CA9749.6 PAC:31941357 |
High | No | 1168 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -30.171 AMFE: -0.613 GC content %: 49.229 | |
| Taestivum_Traes_3AS_3B7CA9749.7 Traes_3AS_3B7CA9749.7 PAC:31941361 |
High | No | 1049 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -29.924 AMFE: -0.596 GC content %: 50.238 | |
| Taestivum_Traes_3AS_3B7CA9749.9 Traes_3AS_3B7CA9749.9 PAC:31941365 |
High | No | 914 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -29.103 AMFE: -0.564 GC content %: 51.641 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
