GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_475E99EA7 Traes_3AS_475E99EA7	ta_iwgsc_3as_v1_3389737	1571	3816	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_475E99EA7.1 Traes_3AS_475E99EA7.1 PAC:31929424	High	No	821		Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -25.225 AMFE: -0.653 GC content %: 38.611
Taestivum_Traes_3AS_475E99EA7.2 Traes_3AS_475E99EA7.2 PAC:31929425	High	No	439		Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -27.950 AMFE: -0.656 GC content %: 42.597
Taestivum_Traes_3AS_475E99EA7.3 Traes_3AS_475E99EA7.3 PAC:31929426	High	No	2103		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -24.993 AMFE: -0.659 GC content %: 37.898

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).