GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_49EA8F68E Traes_3AS_49EA8F68E	ta_iwgsc_3as_v1_405081	1	395	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_49EA8F68E.1 Traes_3AS_49EA8F68E.1 PAC:31865260	High	No	342		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -39.708 AMFE: -0.571 GC content %: 69.591
Taestivum_Traes_3AS_49EA8F68E.2 Traes_3AS_49EA8F68E.2 PAC:31865261	High	No	374		Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -37.674 AMFE: -0.544 GC content %: 69.251

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).