Gene
Taestivum Traes 3AS 5B1F212B0
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AS_5B1F212B0 Traes_3AS_5B1F212B0 |
ta_iwgsc_3as_v1_3445194 | 461 | 7738 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AS_5B1F212B0.2 Traes_3AS_5B1F212B0.2 PAC:32007858 |
High | No | 1081 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -31.711 AMFE: -0.657 GC content %: 48.289 | |
| Taestivum_Traes_3AS_5B1F212B0.3 Traes_3AS_5B1F212B0.3 PAC:32007855 |
High | No | 1174 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -32.513 AMFE: -0.635 GC content %: 51.193 | |
| Taestivum_Traes_3AS_5B1F212B0.4 Traes_3AS_5B1F212B0.4 PAC:32007854 |
High | No | 585 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -34.667 AMFE: -0.638 GC content %: 54.359 | |
| Taestivum_Traes_3AS_5B1F212B0.5 Traes_3AS_5B1F212B0.5 PAC:32007857 |
High | No | 562 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -35.907 AMFE: -0.649 GC content %: 55.338 | |
| Taestivum_Traes_3AS_5B1F212B0.6 Traes_3AS_5B1F212B0.6 PAC:32007856 |
High | No | 760 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -35.789 AMFE: -0.651 GC content %: 55.000 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
