GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_7F8A66CED Traes_3AS_7F8A66CED	ta_iwgsc_3as_v1_621863	48	2098	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_7F8A66CED.1 Traes_3AS_7F8A66CED.1 PAC:31745504	Low	No	741		Get ORF Coding potential... Type: noncoding Potential: -0.159 Folding energies... MFEI: -23.833 AMFE: -0.607 GC content %: 39.271
Taestivum_Traes_3AS_7F8A66CED.2 Traes_3AS_7F8A66CED.2 PAC:31745501	Low	No	915		Get ORF Coding potential... Type: noncoding Potential: -0.021 Folding energies... MFEI: -25.454 AMFE: -0.636 GC content %: 40.000
Taestivum_Traes_3AS_7F8A66CED.3 Traes_3AS_7F8A66CED.3 PAC:31745502	Low	No	1085		Get ORF Coding potential... Type: noncoding Potential: -0.081 Folding energies... MFEI: -24.857 AMFE: -0.621 GC content %: 40.000
Taestivum_Traes_3AS_7F8A66CED.4 Traes_3AS_7F8A66CED.4 PAC:31745503	Low	No	1257		Get ORF Coding potential... Type: noncoding Potential: -0.100 Folding energies... MFEI: -25.760 AMFE: -0.628 GC content %: 41.050

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).