GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_8C9A71217 Traes_3AS_8C9A71217	ta_iwgsc_3as_v1_3387637	12	3791	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_8C9A71217.1 Traes_3AS_8C9A71217.1 PAC:31783070	High	No	898		Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -22.428 AMFE: -0.584 GC content %: 38.419
Taestivum_Traes_3AS_8C9A71217.4 Traes_3AS_8C9A71217.4 PAC:31783071	High	No	1294		Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -23.045 AMFE: -0.609 GC content %: 37.867

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).