GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3AS_D20BF8AF8 Traes_3AS_D20BF8AF8	ta_iwgsc_3as_v1_3324721	1565	5532	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3AS_D20BF8AF8.5 Traes_3AS_D20BF8AF8.5 PAC:31921873	Low	No	1280		Get ORF Coding potential... Type: noncoding Potential: -0.296 Folding energies... MFEI: -28.664 AMFE: -0.607 GC content %: 47.188
Taestivum_Traes_3AS_D20BF8AF8.6 Traes_3AS_D20BF8AF8.6 PAC:31921874	High	No	430		Get ORF Coding potential... Type: noncoding Potential: -0.591 Folding energies... MFEI: -22.535 AMFE: -0.547 GC content %: 41.163
Taestivum_Traes_3AS_D20BF8AF8.7 Traes_3AS_D20BF8AF8.7 PAC:31921875	High	No	369		Get ORF Coding potential... Type: noncoding Potential: -0.558 Folding energies... MFEI: -21.599 AMFE: -0.511 GC content %: 42.276

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).