Gene
Taestivum Traes 3AS F15E74B7B
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3AS_F15E74B7B Traes_3AS_F15E74B7B |
ta_iwgsc_3as_v1_1833333 | 30 | 1765 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3AS_F15E74B7B.1 Traes_3AS_F15E74B7B.1 PAC:31821120 |
High | No | 898 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -29.076 AMFE: -0.702 GC content %: 41.425 | |
| Taestivum_Traes_3AS_F15E74B7B.2 Traes_3AS_F15E74B7B.2 PAC:31821118 |
High | No | 863 | Get ORF Coding potential... Type: noncoding Potential: -0.607 Folding energies... MFEI: -28.482 AMFE: -0.690 GC content %: 41.251 | |
| Taestivum_Traes_3AS_F15E74B7B.3 Traes_3AS_F15E74B7B.3 PAC:31821117 |
High | No | 1328 | Get ORF Coding potential... Type: noncoding Potential: -0.710 Folding energies... MFEI: -27.236 AMFE: -0.692 GC content %: 39.383 | |
| Taestivum_Traes_3AS_F15E74B7B.4 Traes_3AS_F15E74B7B.4 PAC:31821119 |
High | No | 896 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -28.795 AMFE: -0.688 GC content %: 41.853 | |
| Taestivum_Traes_3AS_F15E74B7B.5 Traes_3AS_F15E74B7B.5 PAC:31821121 |
Low | No | 1395 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -27.118 AMFE: -0.682 GC content %: 39.785 | |
| Taestivum_Traes_3AS_F15E74B7B.6 Traes_3AS_F15E74B7B.6 PAC:31821122 |
High | No | 822 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -29.100 AMFE: -0.697 GC content %: 41.727 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_3AS_F15E74B7B.5 | RepBase (RepeatMasker) | 2014-01-31 | Copia-20_EPa-I |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
