GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_00DD334A0 Traes_3B_00DD334A0	ta_iwgsc_3b_v1_10666915	15107	16396	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_00DD334A0.2 Traes_3B_00DD334A0.2 PAC:31980289	Low	No	725		Get ORF Coding potential... Type: noncoding Potential: -0.195 Folding energies... MFEI: -34.083 AMFE: -0.615 GC content %: 55.448
Taestivum_Traes_3B_00DD334A0.4 Traes_3B_00DD334A0.4 PAC:31980292	Low	No	727		Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -36.149 AMFE: -0.618 GC content %: 58.459

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).