Gene
Taestivum Traes 3B 01BF34A41
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_01BF34A41 Traes_3B_01BF34A41 |
ta_iwgsc_3b_v1_10493247 | 1 | 2651 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_01BF34A41.1 Traes_3B_01BF34A41.1 PAC:31828973 |
Low | No | 2520 | Get ORF Coding potential... Type: noncoding Potential: -0.457 Folding energies... MFEI: -24.000 AMFE: -0.619 GC content %: 38.770 | |
| Taestivum_Traes_3B_01BF34A41.2 Traes_3B_01BF34A41.2 PAC:31828974 |
Low | No | 545 | Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -30.862 AMFE: -0.614 GC content %: 50.275 | |
| Taestivum_Traes_3B_01BF34A41.3 Traes_3B_01BF34A41.3 PAC:31828975 |
Low | No | 2193 | Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -24.063 AMFE: -0.613 GC content %: 39.261 | |
| Taestivum_Traes_3B_01BF34A41.4 Traes_3B_01BF34A41.4 PAC:31828976 |
Low | No | 479 | Get ORF Coding potential... Type: noncoding Potential: -0.190 Folding energies... MFEI: -32.025 AMFE: -0.619 GC content %: 51.775 | |
| Taestivum_Traes_3B_01BF34A41.5 Traes_3B_01BF34A41.5 PAC:31828977 |
Low | No | 2203 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -23.818 AMFE: -0.608 GC content %: 39.174 | |
| Taestivum_Traes_3B_01BF34A41.6 Traes_3B_01BF34A41.6 PAC:31828978 |
Low | No | 2521 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -24.137 AMFE: -0.622 GC content %: 38.794 | |
| Taestivum_Traes_3B_01BF34A41.7 Traes_3B_01BF34A41.7 PAC:31828980 |
Low | No | 1990 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -23.985 AMFE: -0.615 GC content %: 38.995 | |
| Taestivum_Traes_3B_01BF34A41.8 Traes_3B_01BF34A41.8 PAC:31828979 |
Low | No | 2436 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -23.957 AMFE: -0.624 GC content %: 38.424 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
