GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_07F99F5B8 Traes_3B_07F99F5B8	ta_iwgsc_3b_v1_10495060	9205	14189	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_07F99F5B8.3 Traes_3B_07F99F5B8.3 PAC:31834265	High	No	1279		Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -23.511 AMFE: -0.640 GC content %: 36.747
Taestivum_Traes_3B_07F99F5B8.4 Traes_3B_07F99F5B8.4 PAC:31834266	High	No	477		Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -23.606 AMFE: -0.569 GC content %: 41.509
Taestivum_Traes_3B_07F99F5B8.5 Traes_3B_07F99F5B8.5 PAC:31834267	High	No	395		Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -23.595 AMFE: -0.634 GC content %: 37.215

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).