GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_0A9BE4949 Traes_3B_0A9BE4949	ta_iwgsc_3b_v1_10507203	494	1475	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_0A9BE4949.1 Traes_3B_0A9BE4949.1 PAC:31839965	Low	No	371		Get ORF Coding potential... Type: noncoding Potential: -0.532 Folding energies... MFEI: -27.278 AMFE: -0.632 GC content %: 43.127
Taestivum_Traes_3B_0A9BE4949.2 Traes_3B_0A9BE4949.2 PAC:31839966	Low	No	332		Get ORF Coding potential... Type: noncoding Potential: -0.518 Folding energies... MFEI: -27.410 AMFE: -0.632 GC content %: 43.373
Taestivum_Traes_3B_0A9BE4949.3 Traes_3B_0A9BE4949.3 PAC:31839967	Low	No	363		Get ORF Coding potential... Type: noncoding Potential: -0.511 Folding energies... MFEI: -27.658 AMFE: -0.620 GC content %: 44.628

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).