GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_105153DA2 Traes_3B_105153DA2	ta_iwgsc_3b_v1_10484247	4	3765	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_105153DA2.20 Traes_3B_105153DA2.20 PAC:31890088	Low	No	416		Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -27.332 AMFE: -0.621 GC content %: 43.990
Taestivum_Traes_3B_105153DA2.22 Traes_3B_105153DA2.22 PAC:31890089	Low	No	390		Get ORF Coding potential... Type: noncoding Potential: -1.372 Folding energies... MFEI: -28.154 AMFE: -0.631 GC content %: 44.615
Taestivum_Traes_3B_105153DA2.23 Traes_3B_105153DA2.23 PAC:31890090	High	No	656		Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -27.576 AMFE: -0.648 GC content %: 42.530

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).