GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_1191E0824 Traes_3B_1191E0824	ta_iwgsc_3b_v1_10479509	2017	5536	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_1191E0824.1 Traes_3B_1191E0824.1 PAC:31831557	High	No	976		Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -34.816 AMFE: -0.647 GC content %: 53.791
Taestivum_Traes_3B_1191E0824.2 Traes_3B_1191E0824.2 PAC:31831558	High	No	1198		Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -32.087 AMFE: -0.644 GC content %: 49.833

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).