GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_11F25C6EF Traes_3B_11F25C6EF	ta_iwgsc_3b_v1_10760026	9	2983	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_11F25C6EF.3 Traes_3B_11F25C6EF.3 PAC:31858119	Low	No	310		Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -22.258 AMFE: -0.489 GC content %: 45.484
Taestivum_Traes_3B_11F25C6EF.4 Traes_3B_11F25C6EF.4 PAC:31858120	Low	No	790		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -25.570 AMFE: -0.552 GC content %: 46.329
Taestivum_Traes_3B_11F25C6EF.5 Traes_3B_11F25C6EF.5 PAC:31858121	High	No	684		Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -24.591 AMFE: -0.527 GC content %: 46.637
Taestivum_Traes_3B_11F25C6EF.6 Traes_3B_11F25C6EF.6 PAC:31858122	Low	No	822		Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -26.472 AMFE: -0.565 GC content %: 46.837

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).