GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_129223C73 Traes_3B_129223C73	ta_iwgsc_3b_v1_10685960	4	7359	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_129223C73.1 Traes_3B_129223C73.1 PAC:31748728	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -28.118 AMFE: -0.541 GC content %: 51.944
Taestivum_Traes_3B_129223C73.11 Traes_3B_129223C73.11 PAC:31748732	High	No	2211		Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -25.993 AMFE: -0.665 GC content %: 39.077
Taestivum_Traes_3B_129223C73.6 Traes_3B_129223C73.6 PAC:31748726	High	No	639		Get ORF Coding potential... Type: noncoding Potential: -0.665 Folding energies... MFEI: -29.264 AMFE: -0.553 GC content %: 52.895

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).