GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_17F5AFFDF Traes_3B_17F5AFFDF	ta_iwgsc_3b_v1_10463530	4	2712	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_17F5AFFDF.1 Traes_3B_17F5AFFDF.1 PAC:31766469	High	No	2070		Get ORF Coding potential... Type: noncoding Potential: -0.596 Folding energies... MFEI: -29.749 AMFE: -0.664 GC content %: 44.831
Taestivum_Traes_3B_17F5AFFDF.2 Traes_3B_17F5AFFDF.2 PAC:31766470	High	No	2086		Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -29.842 AMFE: -0.664 GC content %: 44.919
Taestivum_Traes_3B_17F5AFFDF.3 Traes_3B_17F5AFFDF.3 PAC:31766468	High	No	2085		Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -29.631 AMFE: -0.659 GC content %: 44.940

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).