GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_2A279224B Traes_3B_2A279224B	ta_iwgsc_3b_v1_10589025	1	1824	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_2A279224B.1 Traes_3B_2A279224B.1 PAC:32005844	High	No	1593		Get ORF Coding potential... Type: noncoding Potential: -0.401 Folding energies... MFEI: -30.571 AMFE: -0.666 GC content %: 45.888
Taestivum_Traes_3B_2A279224B.3 Traes_3B_2A279224B.3 PAC:32005845	High	No	507		Get ORF Coding potential... Type: noncoding Potential: -0.318 Folding energies... MFEI: -33.037 AMFE: -0.647 GC content %: 51.085

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).