GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_305AEC79F Traes_3B_305AEC79F	ta_iwgsc_3b_v1_6869763	9895	12423	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_305AEC79F.1 Traes_3B_305AEC79F.1 PAC:31977753	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -23.966 AMFE: -0.575 GC content %: 41.680
Taestivum_Traes_3B_305AEC79F.2 Traes_3B_305AEC79F.2 PAC:31977754	High	No	2394		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -25.877 AMFE: -0.667 GC content %: 38.805

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).