Gene
Taestivum Traes 3B 3A9E6F4E1
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_3A9E6F4E1 Traes_3B_3A9E6F4E1 |
ta_iwgsc_3b_v1_10761572 | 3649 | 9347 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_3A9E6F4E1.1 Traes_3B_3A9E6F4E1.1 PAC:31825921 |
Low | Yes | 624 | Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -32.644 AMFE: -0.500 GC content %: 65.224 | |
| Taestivum_Traes_3B_3A9E6F4E1.10 Traes_3B_3A9E6F4E1.10 PAC:31825929 |
High | No | 1304 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -31.672 AMFE: -0.614 GC content %: 51.610 | |
| Taestivum_Traes_3B_3A9E6F4E1.11 Traes_3B_3A9E6F4E1.11 PAC:31825931 |
High | No | 1415 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -30.898 AMFE: -0.611 GC content %: 50.601 | |
| Taestivum_Traes_3B_3A9E6F4E1.12 Traes_3B_3A9E6F4E1.12 PAC:31825932 |
High | No | 1340 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -30.351 AMFE: -0.600 GC content %: 50.597 | |
| Taestivum_Traes_3B_3A9E6F4E1.13 Traes_3B_3A9E6F4E1.13 PAC:31825933 |
High | No | 1389 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -30.014 AMFE: -0.600 GC content %: 50.036 | |
| Taestivum_Traes_3B_3A9E6F4E1.14 Traes_3B_3A9E6F4E1.14 PAC:31825934 |
High | No | 1229 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -31.343 AMFE: -0.601 GC content %: 52.156 | |
| Taestivum_Traes_3B_3A9E6F4E1.15 Traes_3B_3A9E6F4E1.15 PAC:31825935 |
Low | No | 330 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -32.909 AMFE: -0.624 GC content %: 52.727 | |
| Taestivum_Traes_3B_3A9E6F4E1.2 Traes_3B_3A9E6F4E1.2 PAC:31825926 |
High | No | 1396 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -30.702 AMFE: -0.646 GC content %: 47.493 | |
| Taestivum_Traes_3B_3A9E6F4E1.3 Traes_3B_3A9E6F4E1.3 PAC:31825923 |
High | No | 2616 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -27.683 AMFE: -0.667 GC content %: 41.476 | |
| Taestivum_Traes_3B_3A9E6F4E1.4 Traes_3B_3A9E6F4E1.4 PAC:31825928 |
High | No | 2225 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.472 AMFE: -0.635 GC content %: 44.809 | |
| Taestivum_Traes_3B_3A9E6F4E1.5 Traes_3B_3A9E6F4E1.5 PAC:31825922 |
High | No | 1376 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -31.250 AMFE: -0.616 GC content %: 50.727 | |
| Taestivum_Traes_3B_3A9E6F4E1.6 Traes_3B_3A9E6F4E1.6 PAC:31825924 |
High | No | 1437 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -30.814 AMFE: -0.615 GC content %: 50.104 | |
| Taestivum_Traes_3B_3A9E6F4E1.7 Traes_3B_3A9E6F4E1.7 PAC:31825927 |
High | No | 2658 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -27.867 AMFE: -0.648 GC content %: 43.002 | |
| Taestivum_Traes_3B_3A9E6F4E1.8 Traes_3B_3A9E6F4E1.8 PAC:31825925 |
High | No | 2597 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -28.028 AMFE: -0.649 GC content %: 43.165 | |
| Taestivum_Traes_3B_3A9E6F4E1.9 Traes_3B_3A9E6F4E1.9 PAC:31825930 |
High | No | 2276 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -28.216 AMFE: -0.633 GC content %: 44.596 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
